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3 months ago
MeDAL: Medical Abbreviation Disambiguation Dataset for Natural Language Understanding Pretraining
Zhi Wen Xing Han Lu Siva Reddy

Abstract
One of the biggest challenges that prohibit the use of many current NLP methods in clinical settings is the availability of public datasets. In this work, we present MeDAL, a large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medical domain. We pre-trained several models of common architectures on this dataset and empirically showed that such pre-training leads to improved performance and convergence speed when fine-tuning on downstream medical tasks.
Code Repositories
mcGill-NLP/medal
Official
pytorch
Mentioned in GitHub
Benchmarks
| Benchmark | Methodology | Metrics |
|---|---|---|
| mortality-prediction-on-mimic-iii | LSTM+SA (pretrained) | Accuracy: 0.8298 |
| mortality-prediction-on-mimic-iii | ELECTRA (pretrained) | Accuracy: 0.8443 |
| mortality-prediction-on-mimic-iii | ELECTRA (from scratch) | Accuracy: 0.8325 |
| mortality-prediction-on-mimic-iii | LSTM (pretrained) | Accuracy: 0.828 |
| mortality-prediction-on-mimic-iii | LSTM+SA (from scratch) | Accuracy: 0.7996 |
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