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SOTA
Named Entity Recognition (NER)
Named Entity Recognition Ner On Jnlpba
Named Entity Recognition Ner On Jnlpba
Metrics
F1
Results
Performance results of various models on this benchmark
Columns
Model Name
F1
Paper Title
Repository
Spark NLP
81.29
Biomedical Named Entity Recognition at Scale
-
KeBioLM
82.0
Improving Biomedical Pretrained Language Models with Knowledge
-
BioBERT
77.59
BioBERT: a pre-trained biomedical language representation model for biomedical text mining
-
BioMobileBERT
80.13
On the Effectiveness of Compact Biomedical Transformers
-
PubMedBERT uncased
79.1
Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing
-
CompactBioBERT
79.88
On the Effectiveness of Compact Biomedical Transformers
-
SciBERT (Base Vocab)
75.77
SciBERT: A Pretrained Language Model for Scientific Text
-
DistilBioBERT
79.97
On the Effectiveness of Compact Biomedical Transformers
-
BioLinkBERT (large)
80.06
LinkBERT: Pretraining Language Models with Document Links
-
BioKMNER + BioBERT
77.83
Improving Biomedical Named Entity Recognition with Syntactic Information
BioFLAIR
77.03
BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks
-
BINDER
80.3
Optimizing Bi-Encoder for Named Entity Recognition via Contrastive Learning
-
BioDistilBERT
79.1
On the Effectiveness of Compact Biomedical Transformers
-
SciFive-Large
77.55
SciFive: a text-to-text transformer model for biomedical literature
-
aimped
77.72
-
-
MINER
77.03
MINER: Improving Out-of-Vocabulary Named Entity Recognition from an Information Theoretic Perspective
-
BLSTM-CNN-Char (SparkNLP)
81.29
Biomedical Named Entity Recognition at Scale
-
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