Named Entity Recognition Ner On Ncbi Disease

Metrics

Results

Performance results of various models on this benchmark

Model Name	F1	Paper Title	Repository
SciFive-Base	89.39	SciFive: a text-to-text transformer model for biomedical literature	-
BLSTM-CNN-Char (SparkNLP)	89.13	Biomedical Named Entity Recognition at Scale	-
GoLLIE	86.5	GoLLIE: Annotation Guidelines improve Zero-Shot Information-Extraction	-
BioMobileBERT	87.21	On the Effectiveness of Compact Biomedical Transformers	-
BioBERT	89.71	BioBERT: a pre-trained biomedical language representation model for biomedical text mining	-
CL-KL	88.96	Improving Named Entity Recognition by External Context Retrieving and Cooperative Learning	-
BioLinkBERT (large)	88.76	LinkBERT: Pretraining Language Models with Document Links	-
BERN2	88.6	BERN2: an advanced neural biomedical named entity recognition and normalization tool	-
DistilBioBERT	87.93	On the Effectiveness of Compact Biomedical Transformers	-
PubMedBERT uncased	87.82	Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing	-
BERT-CRF	84.5	Focusing on Potential Named Entities During Active Label Acquisition	-
BioMegatron BERT-cased	87.8	BioMegatron: Larger Biomedical Domain Language Model	-
SciBERT (Base Vocab)	86.88	SciBERT: A Pretrained Language Model for Scientific Text	-
NuNER Zero Span	61.1	NuNER: Entity Recognition Encoder Pre-training via LLM-Annotated Data	-
SpanModel + SequenceLabelingModel	89.6	Comparing and combining some popular NER approaches on Biomedical tasks	-
GPT-4	-	Evaluation of large language model performance on the Biomedical Language Understanding and Reasoning Benchmark	-
KeBioLM	89.1	Improving Biomedical Pretrained Language Models with Knowledge	-
BERN	88.3	A Neural Named Entity Recognition and Multi-Type Normalization Tool for Biomedical Text Mining
CompactBioBERT	88.67	On the Effectiveness of Compact Biomedical Transformers	-
STM	88.6	Learning A Unified Named Entity Tagger From Multiple Partially Annotated Corpora For Efficient Adaptation	-

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