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5 months ago

BCI: Breast Cancer Immunohistochemical Image Generation through Pyramid Pix2pix

Shengjie Liu; Chuang Zhu; Feng Xu; Xinyu Jia; Zhongyue Shi; Mulan Jin

BCI: Breast Cancer Immunohistochemical Image Generation through Pyramid Pix2pix

Abstract

The evaluation of human epidermal growth factor receptor 2 (HER2) expression is essential to formulate a precise treatment for breast cancer. The routine evaluation of HER2 is conducted with immunohistochemical techniques (IHC), which is very expensive. Therefore, for the first time, we propose a breast cancer immunohistochemical (BCI) benchmark attempting to synthesize IHC data directly with the paired hematoxylin and eosin (HE) stained images. The dataset contains 4870 registered image pairs, covering a variety of HER2 expression levels. Based on BCI, as a minor contribution, we further build a pyramid pix2pix image generation method, which achieves better HE to IHC translation results than the other current popular algorithms. Extensive experiments demonstrate that BCI poses new challenges to the existing image translation research. Besides, BCI also opens the door for future pathology studies in HER2 expression evaluation based on the synthesized IHC images. BCI dataset can be downloaded from https://bupt-ai-cz.github.io/BCI.

Code Repositories

bupt-ai-cz/BCI
Official
pytorch
Mentioned in GitHub

Benchmarks

BenchmarkMethodologyMetrics
image-to-image-translation-on-bcipyramidpix2pix
Average PSNR: 21.160
SSIM: 0.477
image-to-image-translation-on-bcipix2pix
Average PSNR: 19.328
SSIM: 0.440
image-to-image-translation-on-bcipix2pixHD
Average PSNR: 19.634
SSIM: 0.471
image-to-image-translation-on-bcicycleGAN
Average PSNR: 16.203
SSIM: 0.373
image-to-image-translation-on-flirBCI
PSNR: 11.14
SSIM: 0.21
image-to-image-translation-on-llvipcycleGAN
PSNR: 11.22
SSIM: 0.214
image-to-image-translation-on-llvippix2pixHD
PSNR: 11.156
SSIM: 0.228
image-to-image-translation-on-llvippyramidpix2pix
PSNR: 12.191
SSIM: 0.278

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