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3 months ago

Multi-scale Hierarchical Vision Transformer with Cascaded Attention Decoding for Medical Image Segmentation

Md Mostafijur Rahman Radu Marculescu

Multi-scale Hierarchical Vision Transformer with Cascaded Attention Decoding for Medical Image Segmentation

Abstract

Transformers have shown great success in medical image segmentation. However, transformers may exhibit a limited generalization ability due to the underlying single-scale self-attention (SA) mechanism. In this paper, we address this issue by introducing a Multi-scale hiERarchical vIsion Transformer (MERIT) backbone network, which improves the generalizability of the model by computing SA at multiple scales. We also incorporate an attention-based decoder, namely Cascaded Attention Decoding (CASCADE), for further refinement of multi-stage features generated by MERIT. Finally, we introduce an effective multi-stage feature mixing loss aggregation (MUTATION) method for better model training via implicit ensembling. Our experiments on two widely used medical image segmentation benchmarks (i.e., Synapse Multi-organ, ACDC) demonstrate the superior performance of MERIT over state-of-the-art methods. Our MERIT architecture and MUTATION loss aggregation can be used with downstream medical image and semantic segmentation tasks.

Code Repositories

SLDGroup/MERIT
Official
pytorch
Mentioned in GitHub

Benchmarks

BenchmarkMethodologyMetrics
medical-image-segmentation-on-automaticMERIT
Avg DSC: 92.32
medical-image-segmentation-on-miccai-2015-1MERIT
Avg DSC: 84.90
Avg HD: 13.22
medical-image-segmentation-on-synapse-multiMERIT
Avg DSC: 84.90
Avg HD: 13.22

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