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5 months ago

G-CASCADE: Efficient Cascaded Graph Convolutional Decoding for 2D Medical Image Segmentation

Md Mostafijur Rahman; Radu Marculescu

G-CASCADE: Efficient Cascaded Graph Convolutional Decoding for 2D Medical Image Segmentation

Abstract

In recent years, medical image segmentation has become an important application in the field of computer-aided diagnosis. In this paper, we are the first to propose a new graph convolution-based decoder namely, Cascaded Graph Convolutional Attention Decoder (G-CASCADE), for 2D medical image segmentation. G-CASCADE progressively refines multi-stage feature maps generated by hierarchical transformer encoders with an efficient graph convolution block. The encoder utilizes the self-attention mechanism to capture long-range dependencies, while the decoder refines the feature maps preserving long-range information due to the global receptive fields of the graph convolution block. Rigorous evaluations of our decoder with multiple transformer encoders on five medical image segmentation tasks (i.e., Abdomen organs, Cardiac organs, Polyp lesions, Skin lesions, and Retinal vessels) show that our model outperforms other state-of-the-art (SOTA) methods. We also demonstrate that our decoder achieves better DICE scores than the SOTA CASCADE decoder with 80.8% fewer parameters and 82.3% fewer FLOPs. Our decoder can easily be used with other hierarchical encoders for general-purpose semantic and medical image segmentation tasks.

Code Repositories

SLDGroup/G-CASCADE
Official
pytorch
Mentioned in GitHub

Benchmarks

BenchmarkMethodologyMetrics
medical-image-segmentation-on-automaticMERIT-GCASCADE
Avg DSC: 92.23
medical-image-segmentation-on-automaticPVT-GCASCADE
Avg DSC: 91.95
medical-image-segmentation-on-chase-db1PVT-GCASCADE
DSC: 0.8251
medical-image-segmentation-on-chase-db1MERIT-GCASCADE
DSC: 0.8267
medical-image-segmentation-on-cvc-clinicdbPVT-GCASCADE
mIoU: 0.9018
mean Dice: 0.9468
medical-image-segmentation-on-cvc-colondbPVT-GCASCADE
mIoU: 0.7460
mean Dice: 0.8261
medical-image-segmentation-on-drive-1MERIT-GCASCADE
F1 score: 0.8290
Recall: 0.8281
Specificity: 0.9844
mIoU: 0.7081
medical-image-segmentation-on-drive-1PVT-GCASCADE
F1 score: 0.8210
Recall: 0.83
Specificity: 0.9822
mIoU: 0.697
medical-image-segmentation-on-isic-2018-1PVT-GCASCADE
DSC: 91.51
mIoU: 86.53
medical-image-segmentation-on-kvasir-segPVT-GCASCADE
mIoU: 0.8790
mean Dice: 0.9274
medical-image-segmentation-on-miccai-2015-1MERIT-GCASCADE
Avg DSC: 84.54
Avg HD: 10.38
medical-image-segmentation-on-miccai-2015-1PVT-GCASCADE
Avg DSC: 83.28
Avg HD: 15.83
retinal-vessel-segmentation-on-chase_db1MERIT-GCASCADE
F1 score: 0.8267
Sensitivity: 0.8493
mIOU: 0.7050
retinal-vessel-segmentation-on-chase_db1PVT-GCASCADE
F1 score: 0.8251
Sensitivity: 0.8584
mIOU: 0.7024
retinal-vessel-segmentation-on-driveMERIT-GCASCADE
Accuracy: 0.9707
F1 score: 0.8290
Specificity: 0.9844
mIoU: 0.7081
sensitivity: 0.8281
retinal-vessel-segmentation-on-drivePVT-GCASCADE
Accuracy: 0.9689
F1 score: 0.8210
Specificity: 0.9822
mIoU: 0.6970
sensitivity: 0.83

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